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dhrs13a.2 dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [ Danio rerio (zebrafish) ]

Gene ID: 447903, updated on 28-Oct-2024

Summary

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Official Symbol
dhrs13a.2provided by ZNC
Official Full Name
dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-69
See related
Ensembl:ENSDARG00000111240 AllianceGenome:ZFIN:ZDB-GENE-040912-69
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fa18b09; wu:fk89f01; zgc:101565
Summary
Predicted to enable oxidoreductase activity. Is expressed in EVL; periderm; and pharynx. Orthologous to human DHRS13 (dehydrogenase/reductase 13). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

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See dhrs13a.2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (36784741..36793412, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (36840983..36849654, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-3 Neighboring gene si:ch211-176g13.8 Neighboring gene pleckstrin homology domain containing B1 Neighboring gene dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 1 Neighboring gene PHD finger protein 12a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Attributing effects of aqueous C60 nano-aggregates to tetrahydrofuran decomposition products in larval zebrafish by assessment of gene expression. Henry TB, et al. Environ Health Perspect, 2007 Jul. PMID 17637923, Free PMC Article
  2. Insight into molecular pathways of retinal metabolism, associated with vitellogenesis in zebrafish. Levi L, et al. Am J Physiol Endocrinol Metab, 2012 Mar 15. PMID 22205629
  3. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Webb KJ, et al. Genome Biol, 2009. PMID 19646228, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dehydrogenase/reductase SDR family member 13a.2
Names
dehydrogenase/reductase (SDR family) member 13a.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004641.1 → NP_001004641.1  dehydrogenase/reductase SDR family member 13a.2

    See identical proteins and their annotated locations for NP_001004641.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081378
    UniProtKB/TrEMBL
    B2GNW0, Q66IF0
    Related
    ENSDARP00000151382.1, ENSDART00000185966.1
    Conserved Domains (2) summary
    PRK06197
    Location:33 → 318
    PRK06197; short chain dehydrogenase; Provisional
    cl21454
    Location:36 → 311
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    36784741..36793412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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