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WDR54 WD repeat domain 54 [ Canis lupus familiaris (dog) ]

Gene ID: 475789, updated on 5-Mar-2024

Summary

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Official Symbol
WDR54provided by VGNC
Official Full Name
WD repeat domain 54provided by VGNC
Primary source
VGNC:VGNC:48375
See related
Ensembl:ENSCAFG00845019604
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See WDR54 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (49559726..49593603, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (48342069..48375651, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (49201309..49235141, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (48576773..48610446, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (48643308..48676908, complement)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene INO80 complex subunit B Neighboring gene rhotekin Neighboring gene chromosome 17 C2orf81 homolog Neighboring gene dynactin subunit 1 Neighboring gene adaptin ear-binding coat-associated protein 1-like Neighboring gene solute carrier family 4 member 5 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium-dependent cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    49559726..49593603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038691693.1 → XP_038547621.1  WD repeat-containing protein 54

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

  2. XM_038691692.1 → XP_038547620.1  WD repeat-containing protein 54

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Related
    ENSCAFP00845027149.1, ENSCAFT00845034665.1
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    48576773..48610446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499134.1 → XP_038355062.1  WD repeat-containing protein 54

    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

  2. XM_038499133.1 → XP_038355061.1  WD repeat-containing protein 54

    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    48643308..48676908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038625763.1 → XP_038481691.1  WD repeat-containing protein 54

    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

  2. XM_038625762.1 → XP_038481690.1  WD repeat-containing protein 54

    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    49201309..49235141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561721.1 → XP_038417649.1  WD repeat-containing protein 54

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

  2. XM_038561720.1 → XP_038417648.1  WD repeat-containing protein 54

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48342069..48375651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005630547.4 → XP_005630604.1  WD repeat-containing protein 54

    See identical proteins and their annotated locations for XP_005630604.1

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]

  2. XM_005630546.4 → XP_005630603.1  WD repeat-containing protein 54

    See identical proteins and their annotated locations for XP_005630603.1

    UniProtKB/TrEMBL
    A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
    Conserved Domains (2) summary
    COG2319
    Location:128 → 324
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 118
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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