slc7a6os solute carrier family 7 member 6 opposite strand [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc7a6osprovided by ZNC
Official Full Name: solute carrier family 7 member 6 opposite strandprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041114-32
See related: Ensembl:ENSDARG00000010596 AllianceGenome:ZFIN:ZDB-GENE-041114-32
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7137677; zgc:103493
Summary: Acts upstream of or within midbrain-hindbrain boundary structural organization and somite development. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SLC7A6OS (solute carrier family 7 member 6 opposite strand). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (28612656..28623292)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (28341463..28352099)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

slc7a6os gene plays a critical role in defined areas of the developing CNS in zebrafish.
Title: slc7a6os gene plays a critical role in defined areas of the developing CNS in zebrafish.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within central nervous system development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in developmental process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within midbrain-hindbrain boundary structural organization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within somite development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: probable RNA polymerase II nuclear localization protein SLC7A6OS

Names: protein SLC7A6OS; solute carrier family 7 member 6 opposite strand transcript homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007344.2 → NP_001007345.2 probable RNA polymerase II nuclear localization protein SLC7A6OS

Status: VALIDATED

Source sequence(s)

CU464087, EH556070, EH577171, EH580278

UniProtKB/Swiss-Prot

Q59I65, Q5U3I2

UniProtKB/TrEMBL

A0A8M1N387, F1QEZ3

Related

ENSDARP00000020840.6, ENSDART00000019991.9

Conserved Domains (1) summary

pfam08574
Location:209 → 273

DUF1762; Protein of unknown function (DUF1762)