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si:ch211-212o1.2 si:ch211-212o1.2 [ Danio rerio (zebrafish) ]

Gene ID: 492735, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-212o1.2provided by ZNC
Official Full Name
si:ch211-212o1.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-310
See related
Ensembl:ENSDARG00000011498 AllianceGenome:ZFIN:ZDB-GENE-041111-310
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7152497
Summary
Predicted to be involved in fatty acid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-212o1.2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (18000670..18060544)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (18011567..18071479)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene si:ch211-216l23.2 Neighboring gene uncharacterized LOC101885646 Neighboring gene zinc finger protein 423 Neighboring gene uncharacterized LOC137488269 Neighboring gene uncharacterized LOC137488268 Neighboring gene cerebellin 1 precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC492735

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080164.1 → NP_001073633.1  uncharacterized protein LOC492735

    See identical proteins and their annotated locations for NP_001073633.1

    Status: PREDICTED

    Source sequence(s)
    CR387935
    UniProtKB/TrEMBL
    A0A8M2B5J2, Q1L946
    Related
    ENSDARP00000119586.1, ENSDART00000147797.2
    Conserved Domains (1) summary
    pfam10520
    Location:97 → 274
    TMEM189_B_dmain; B domain of TMEM189, localization domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    18000670..18060544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159088.5 → XP_005159145.1  uncharacterized protein LOC492735 isoform X2

    See identical proteins and their annotated locations for XP_005159145.1

    UniProtKB/TrEMBL
    A0A8M2B5J2, Q1L946
    Conserved Domains (1) summary
    pfam10520
    Location:97 → 274
    TMEM189_B_dmain; B domain of TMEM189, localization domain

  2. XM_005159087.5 → XP_005159144.1  uncharacterized protein LOC492735 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B5J8
    Conserved Domains (1) summary
    pfam10520
    Location:102 → 279
    TMEM189_B_dmain; B domain of TMEM189, localization domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395019.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    306559..367487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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