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glmna glomulin, FKBP associated protein a [ Danio rerio (zebrafish) ]

Gene ID: 492774, updated on 2-Nov-2024

Summary

Official Symbol
glmnaprovided by ZNC
Official Full Name
glomulin, FKBP associated protein aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-120
See related
Ensembl:ENSDARG00000058267 AllianceGenome:ZFIN:ZDB-GENE-041114-120
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
glmnl; zgc:101567
Summary
Predicted to enable ubiquitin-protein transferase inhibitor activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation; glomangioma; and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See glmna in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (10821104..10857898)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (11037490..11074299)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene growth factor independent 1A transcription repressor a Neighboring gene RNA polymerase II associated protein 2 Neighboring gene cell division cycle 7 homolog (S. cerevisiae) Neighboring gene transcription elongation factor A (SII) N-terminal and central domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin-protein transferase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
glomulin, FKBP associated protein a
Names
glomulin, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007415.1NP_001007416.1  glomulin, FKBP associated protein a

    See identical proteins and their annotated locations for NP_001007416.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085370
    UniProtKB/TrEMBL
    Q5U3W2
    Related
    ENSDARP00000075537.2, ENSDART00000081094.3
    Conserved Domains (1) summary
    pfam08568
    Location:1529
    Kinetochor_Ybp2; uncharacterized protein family, YAP/Alf4/glomulin

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    10821104..10857898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480037.2XP_021335712.1  glomulin, FKBP associated protein a isoform X1

    UniProtKB/TrEMBL
    A0A8M9PW48, B0UYH7
    Related
    ENSDARP00000144115.1, ENSDART00000174629.2
    Conserved Domains (1) summary
    pfam08568
    Location:1529
    Kinetochor_Ybp2; Uncharacterized protein family, YAP/Alf4/glomulin
  2. XM_005171163.5XP_005171220.1  glomulin, FKBP associated protein a isoform X1

    See identical proteins and their annotated locations for XP_005171220.1

    UniProtKB/TrEMBL
    A0A8M9PW48, B0UYH7
    Related
    ENSDARP00000114877.1, ENSDART00000145770.4
    Conserved Domains (1) summary
    pfam08568
    Location:1529
    Kinetochor_Ybp2; Uncharacterized protein family, YAP/Alf4/glomulin