U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

med28 mediator complex subunit 28 [ Danio rerio (zebrafish) ]

Gene ID: 493610, updated on 12-Sep-2024

Summary

Official Symbol
med28provided by ZNC
Official Full Name
mediator complex subunit 28provided by ZNC
Primary source
ZFIN:ZDB-GENE-041121-4
See related
Ensembl:ENSDARG00000037410 AllianceGenome:ZFIN:ZDB-GENE-041121-4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fc74b11; zgc:103633
Summary
Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED28 (mediator complex subunit 28). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See med28 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (21309396..21312596)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (20616459..20619659)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 2a Neighboring gene uncharacterized LOC137490656 Neighboring gene neuropeptide Y receptor Y1 Neighboring gene transmembrane protein 144a Neighboring gene glutamate receptor, ionotropic, AMPA 2a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mediator of RNA polymerase II transcription subunit 28

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007770.1NP_001007771.1  mediator of RNA polymerase II transcription subunit 28

    See identical proteins and their annotated locations for NP_001007771.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085569
    UniProtKB/Swiss-Prot
    Q5RKN3
    UniProtKB/TrEMBL
    B2GR18
    Related
    ENSDARP00000054441.5, ENSDART00000054442.6
    Conserved Domains (1) summary
    pfam11594
    Location:73166
    Med28; Mediator complex subunit 28

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    21309396..21312596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394477.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    184082..187488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395211.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    276087..279287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_3

Genomic

  1. NW_018395372.1 Reference GRCz11 ALT_DRER_TU_3

    Range
    185031..188465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)