tnfsf10l4 tumor necrosis factor (ligand) superfamily, member 10 like 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tnfsf10l4provided by ZNC
Official Full Name: tumor necrosis factor (ligand) superfamily, member 10 like 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-050227-6
See related: Ensembl:ENSDARG00000058068 AllianceGenome:ZFIN:ZDB-GENE-050227-6
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: dl3; zgc:113297
Summary: Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (22579964..22583541)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (22076165..22079741)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables tumor necrosis factor receptor binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune response	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: death ligand 3; tumor necrosis factor (ligand) superfamily, member 10 like 4

Names: TNFSF10-4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013283.2 → NP_001013301.2 tumor necrosis factor (ligand) superfamily, member 10 like 4

Status: VALIDATED

Source sequence(s)

BX470076

UniProtKB/TrEMBL

A0A8M2BCH6, Q0PKX8

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

22579964..22583541

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005165144.3 → XP_005165201.1 death ligand 3 isoform X1

UniProtKB/TrEMBL

Q0PKX8

Related

ENSDARP00000075321.4, ENSDART00000080877.5

Conserved Domains (1) summary

pfam00229
Location:168 → 279

TNF; TNF(Tumour Necrosis Factor) family