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zgc:112185 zgc:112185 [ Danio rerio (zebrafish) ]

Gene ID: 541326, updated on 12-Sep-2024

Summary

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Official Symbol
zgc:112185provided by ZNC
Official Full Name
zgc:112185provided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-14
See related
Ensembl:ENSDARG00000038556 AllianceGenome:ZFIN:ZDB-GENE-050320-14
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C8orf33 (chromosome 8 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See zgc:112185 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37681082..37688208, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37793185..37800311, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 24 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 3 Neighboring gene H3 histone, family 3D Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0488 protein C8orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013454.2 → NP_001013472.2  UPF0488 protein C8orf33 homolog

    Status: VALIDATED

    Source sequence(s)
    BX322798
    Related
    ENSDARP00000119789.1, ENSDART00000141414.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    37681082..37688208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BJC4.1 GenPept UniProtKB/Swiss-Prot:Q5BJC4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials