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ttc5 tetratricopeptide repeat domain 5 [ Danio rerio (zebrafish) ]

Gene ID: 550347, updated on 28-Oct-2024

Summary

Official Symbol
ttc5provided by ZNC
Official Full Name
tetratricopeptide repeat domain 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-137
See related
Ensembl:ENSDARG00000013329 AllianceGenome:ZFIN:ZDB-GENE-050417-137
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fi33h05; wu:fy81e07; zgc:112059
Summary
Orthologous to human TTC5 (tetratricopeptide repeat domain 5). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See ttc5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19528306..19538406)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19276348..19286438)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch211-212k18.9 Neighboring gene mannosidase, alpha, class 2B, member 2 Neighboring gene cyclin B1 interacting protein 1 Neighboring gene si:ch211-212k18.5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
tetratricopeptide repeat protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017654.2NP_001017654.2  tetratricopeptide repeat protein 5

    Status: VALIDATED

    Source sequence(s)
    CR352328
    Related
    ENSDARP00000021151.5, ENSDART00000005326.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    19528306..19538406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    250513..260613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)