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capsla calcyphosine-like a [ Danio rerio (zebrafish) ]

Gene ID: 550371, updated on 28-Oct-2024

Summary

Official Symbol
capslaprovided by ZNC
Official Full Name
calcyphosine-like aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7291
See related
Ensembl:ENSDARG00000103521 AllianceGenome:ZFIN:ZDB-GENE-030131-7291
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
capsl; wu:fj05b10; zgc:112473
Summary
Predicted to enable calcium ion binding activity. Is expressed in hypophysis; otic vesicle; pronephric duct; sensory system; and tail bud. Orthologous to human CAPS (calcyphosine) and CAPSL (calcyphosine like). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See capsla in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (53890005..53896304, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (54218461..54224927)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene RAN binding protein 3b Neighboring gene catenin, beta like 1 Neighboring gene neurturin Neighboring gene abhydrolase domain containing 8a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017676.1NP_001017676.1  calcyphosine-like a

    See identical proteins and their annotated locations for NP_001017676.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093331
    UniProtKB/TrEMBL
    Q566U3
    Related
    ENSDARP00000136461.1, ENSDART00000161221.2
    Conserved Domains (3) summary
    cd00051
    Location:2682
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:2482
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:96162
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    53890005..53896304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068224041.1XP_068080142.1  calcyphosine-like a isoform X2

  2. XM_009298923.4XP_009297198.1  calcyphosine-like a isoform X1

    UniProtKB/TrEMBL
    A0A0R4IPL6, A0A8M3B0K1
    Conserved Domains (3) summary
    cd00051
    Location:2682
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:2482
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:96162
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...