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vsig8a V-set and immunoglobulin domain containing 8a [ Danio rerio (zebrafish) ]

Gene ID: 550503, updated on 12-Sep-2024

Summary

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Official Symbol
vsig8aprovided by ZNC
Official Full Name
V-set and immunoglobulin domain containing 8aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-338
See related
Ensembl:ENSDARG00000054050 AllianceGenome:ZFIN:ZDB-GENE-050417-338
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:110326
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See vsig8a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (19523443..19551118)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (19568405..19593684)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat transmembrane neuronal 4 like 1 Neighboring gene si:ch211-127i16.2 Neighboring gene uncharacterized LOC108191473 Neighboring gene uncharacterized LOC137496578 Neighboring gene ATPase H+ transporting V1 subunit B2 Neighboring gene wu:fi09b08

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
V-set and immunoglobulin domain-containing protein 8a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017805.2 → NP_001017805.2  V-set and immunoglobulin domain-containing protein 8a isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, uses an alternate translation start site, and uses an alternate splice site in the 5' coding region compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    CABZ01059627, CABZ01059628, CABZ01059629
    Related
    ENSDARP00000134709.2, ENSDART00000158512.2

  2. NM_001328510.1 → NP_001315439.1  V-set and immunoglobulin domain-containing protein 8a isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    CABZ01059627, CABZ01059628, CABZ01059629
    Related
    ENSDARP00000136962.1, ENSDART00000162912.3
    Conserved Domains (3) summary
    smart00410
    Location:54 → 165
    IG_like; Immunoglobulin like
    pfam07686
    Location:53 → 165
    V-set; Immunoglobulin V-set domain
    pfam13927
    Location:183 → 243
    Ig_3; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    19523443..19551118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068223796.1 → XP_068079897.1  V-set and immunoglobulin domain-containing protein 8a isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394777.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    131149..152821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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