U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lrrc61 leucine rich repeat containing 61 [ Danio rerio (zebrafish) ]

Gene ID: 553439, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
lrrc61provided by ZNC
Official Full Name
leucine rich repeat containing 61provided by ZNC
Primary source
ZFIN:ZDB-GENE-060616-245
See related
Ensembl:ENSDARG00000077357 AllianceGenome:ZFIN:ZDB-GENE-060616-245
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136338; si:dkey-200j6.2
Summary
Orthologous to human LRRC61 (leucine rich repeat containing 61). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See lrrc61 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (25737374..25747464)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (25642303..25652395)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 2B Neighboring gene calcium and integrin binding family member 2 Neighboring gene uncharacterized LOC103909860 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha Neighboring gene uncharacterized LOC103909861

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC136338

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in outer dynein arm assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
leucine-rich repeat-containing protein 61

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042754.1 → NP_001036219.1  leucine-rich repeat-containing protein 61

    See identical proteins and their annotated locations for NP_001036219.1

    Status: PROVISIONAL

    Source sequence(s)
    BC117587
    UniProtKB/TrEMBL
    Q1ED18
    Related
    ENSDARP00000098514.3, ENSDART00000108476.4
    Conserved Domains (1) summary
    sd00031
    Location:54 → 81
    LRR_1; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    25737374..25747464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163094.5 → XP_005163151.1  leucine-rich repeat-containing protein 61 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BA54
    Conserved Domains (1) summary
    sd00031
    Location:54 → 81
    LRR_1; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools