Format

Send to:

Choose Destination

acot20 acyl-CoA thioesterase 20 [ Danio rerio (zebrafish) ]

Gene ID: 553440, updated on 2-Nov-2024

Summary

Official Symbol
acot20provided by ZNC
Official Full Name
acyl-CoA thioesterase 20provided by ZNC
Primary source
ZFIN:ZDB-GENE-041001-182
See related
Ensembl:ENSDARG00000042510 AllianceGenome:ZFIN:ZDB-GENE-041001-182
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-11e23.4
Summary
Predicted to enable fatty acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Is expressed in liver. Orthologous to several human genes including ACOT1 (acyl-CoA thioesterase 1); ACOT2 (acyl-CoA thioesterase 2); and ACOT4 (acyl-CoA thioesterase 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See acot20 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (28935409..28941112)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (29032515..29038233)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 5b Neighboring gene sushi domain containing 6 Neighboring gene acyl-CoA thioesterase 21 Neighboring gene G protein-coupled receptor 176

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables thiolester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
acyl-coenzyme A thioesterase 1; uncharacterized protein LOC553440
Names
CTE1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    28935409..28941112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_691619.7XP_696711.3  acyl-coenzyme A thioesterase 1

    UniProtKB/TrEMBL
    A0A8N7URB7, Q5SPG8
    Related
    ENSDARP00000062337.4, ENSDART00000062338.5
    Conserved Domains (2) summary
    pfam04775
    Location:40154
    Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
    pfam08840
    Location:221430
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal