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zgc:152753 zgc:152753 [ Danio rerio (zebrafish) ]

Gene ID: 553486, updated on 12-Sep-2024

Summary

Official Symbol
zgc:152753provided by ZNC
Official Full Name
zgc:152753provided by ZNC
Primary source
ZFIN:ZDB-GENE-060818-8
See related
Ensembl:ENSDARG00000056443 AllianceGenome:ZFIN:ZDB-GENE-060818-8
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable GTP binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See zgc:152753 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (1934498..1938588, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (2455377..2459471, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 7-like Neighboring gene zgc:101806 Neighboring gene zgc:165583 Neighboring gene si:ch211-254c8.3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC152753

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC553486

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044323.2NP_001037788.1  uncharacterized protein LOC553486

    See identical proteins and their annotated locations for NP_001037788.1

    Status: PREDICTED

    Source sequence(s)
    BC121751
    UniProtKB/TrEMBL
    Q0V951
    Related
    ENSDARP00000017856.7, ENSDART00000013001.8
    Conserved Domains (1) summary
    cd01852
    Location:31225
    AIG1; AvrRpt2-Induced Gene 1 (AIG1)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    1934498..1938588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354240.3XP_017209729.1  uncharacterized protein LOC553486 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z535