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scaf1 SR-related CTD-associated factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 553490, updated on 2-Nov-2024

Summary

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Official Symbol
scaf1provided by ZNC
Official Full Name
SR-related CTD-associated factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-120215-214
See related
Ensembl:ENSDARG00000054010 AllianceGenome:ZFIN:ZDB-GENE-120215-214
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch73-378o21.1
Summary
Predicted to enable RNA polymerase II C-terminal domain binding activity. Orthologous to human SCAF1 (SR-related CTD associated factor 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See scaf1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32477793..32490562)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32346081..32358848)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:ch211-195b15.7 Neighboring gene insulin Neighboring gene transient receptor potential cation channel, subfamily M, member 4a Neighboring gene sarcoplasmic reticulum histidine-rich calcium-binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish. García-Poyatos C, et al. EMBO Rep, 2020 Jul 3. PMID 32496654, Free PMC Article
  2. Melanoma genome evolution across species. Kansler ER, et al. BMC Genomics, 2017 Feb 7. PMID 28173755, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish.
    Title: Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

General protein information

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Preferred Names
splicing factor, arginine/serine-rich 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32477793..32490562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164068.5 → XP_005164125.1  splicing factor, arginine/serine-rich 19 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBI6

  2. XM_005164069.5 → XP_005164126.1  splicing factor, arginine/serine-rich 19 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BBC7, I3ITF2
    Related
    ENSDARP00000126216.1, ENSDART00000151261.3
Nucleotide Protein Strain
Heading Accession and Version

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