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zgc:111986 zgc:111986 [ Danio rerio (zebrafish) ]

Gene ID: 553664, updated on 2-Nov-2024

Summary

Official Symbol
zgc:111986provided by ZNC
Official Full Name
zgc:111986provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-304
See related
Ensembl:ENSDARG00000093406 AllianceGenome:ZFIN:ZDB-GENE-050522-304
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb59h04
Summary
Orthologous to human C6orf62 (chromosome 6 open reading frame 62). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See zgc:111986 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (31580205..31583154, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (31992892..31995841, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene tyrosyl-DNA phosphodiesterase 2b Neighboring gene acyl-CoA thioesterase 13 Neighboring gene geminin DNA replication inhibitor Neighboring gene RHO family interacting cell polarization regulator 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC111986

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C6orf62 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020637.1NP_001018473.1  uncharacterized protein C6orf62 homolog

    See identical proteins and their annotated locations for NP_001018473.1

    Status: PREDICTED

    Source sequence(s)
    BC095633
    UniProtKB/TrEMBL
    Q502N2
    Related
    ENSDARP00000052182.4, ENSDART00000052183.5
    Conserved Domains (1) summary
    pfam15130
    Location:1227
    DUF4566; Domain of unknown function (DUF4566)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    31580205..31583154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395052.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    533572..536511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)