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znf609b zinc finger protein 609b [ Danio rerio (zebrafish) ]

Gene ID: 555219, updated on 17-Sep-2024

Summary

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Official Symbol
znf609bprovided by ZNC
Official Full Name
zinc finger protein 609bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5095
See related
Ensembl:ENSDARG00000104530 AllianceGenome:ZFIN:ZDB-GENE-030131-5095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
znf609; fc26a02; fe47c12; dZ112P11.1; wu:fc26a02; wu:fe47c12; si:busm1-112p11.1
Summary
Orthologous to human ZNF609 (zinc finger protein 609). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See znf609b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (53413445..53534790)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (53228596..53263746)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496104 Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene GRAM domain containing 2Aa Neighboring gene cholinergic receptor, nicotinic, alpha 7a (neuronal)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC173512

General protein information

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Preferred Names
zinc finger protein 609b
Names
zinc finger protein 609

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030081.2 → NP_001025252.2  zinc finger protein 609b

    Status: VALIDATED

    Source sequence(s)
    BX649246, CR381650
    UniProtKB/TrEMBL
    Q6ZM08
    Related
    ENSDARP00000135486.1, ENSDART00000164643.3
    Conserved Domains (2) summary
    COG5189
    Location:499 → 522
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cl27702
    Location:374 → 465
    COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    53413445..53534790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068222301.1 → XP_068078402.1  zinc finger protein 609b isoform X1

  2. XM_068222303.1 → XP_068078404.1  zinc finger protein 609b isoform X3

  3. XM_068222302.1 → XP_068078403.1  zinc finger protein 609b isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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