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hdlbpb high density lipoprotein binding protein b [ Danio rerio (zebrafish) ]

Gene ID: 555414, updated on 2-Nov-2024

Summary

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Official Symbol
hdlbpbprovided by ZNC
Official Full Name
high density lipoprotein binding protein bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6822
See related
Ensembl:ENSDARG00000061864 AllianceGenome:ZFIN:ZDB-GENE-030131-6822
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa07b03; sb:eu532; wu:fa07b03; si:dkey-38p12.2
Summary
Predicted to enable mRNA binding activity. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See hdlbpb in Genome Data Viewer
Location:
chromosome: 12
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (22404094..22445061)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (22282875..22323842)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene N-ethylmaleimide-sensitive factor b Neighboring gene Rho guanine nucleotide exchange factor 15b Neighboring gene neuralized E3 ubiquitin protein ligase 4 Neighboring gene sex hormone-binding globulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. An integrated transcriptomic and proteomic approach characterizing estrogenic and metabolic effects of 17 alpha-ethinylestradiol in zebrafish (Danio rerio). De Wit M, et al. Gen Comp Endocrinol, 2010 Jun 1. PMID 20227414
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
high density lipoprotein binding protein b; vigilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    22404094..22445061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480308.1 → XP_021335983.1  vigilin

    UniProtKB/TrEMBL
    A0A286YBA6, A0A8M9Q8Z8, E7FCA5
    Related
    ENSDARP00000127252.1, ENSDART00000153055.2
    Conserved Domains (1) summary
    cd02394
    Location:580 → 641
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394839.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    346193..387160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_677913.5 → XP_683005.3  vigilin

    UniProtKB/TrEMBL
    A0A286YBA6, A0A8M9Q8Z8, E7FCA5
    Conserved Domains (1) summary
    cd02394
    Location:580 → 641
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
Nucleotide Protein Strain
Heading Accession and Version

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