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ginm1 glycoprotein integral membrane 1 [ Danio rerio (zebrafish) ]

Gene ID: 555775, updated on 28-Oct-2024

Summary

Official Symbol
ginm1provided by ZNC
Official Full Name
glycoprotein integral membrane 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5900
See related
Ensembl:ENSDARG00000021975 AllianceGenome:ZFIN:ZDB-GENE-030131-5900
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-15j16.2
Summary
Predicted to be located in membrane. Orthologous to human GINM1 (glycosylated integral membrane protein 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See ginm1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (23855025..23860808)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (23955925..23961708)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-15j16.3 Neighboring gene si:dkey-15j16.6 Neighboring gene katanin p60 (ATPase containing) subunit A 1 Neighboring gene midasin AAA ATPase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
glycoprotein integral membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079836.1NP_001073305.1  glycoprotein integral membrane protein 1 precursor

    See identical proteins and their annotated locations for NP_001073305.1

    Status: PROVISIONAL

    Source sequence(s)
    BX255904
    UniProtKB/Swiss-Prot
    A5PL58, Q5RFZ5, Q5RII3
    Related
    ENSDARP00000039045.6, ENSDART00000032393.7

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    23855025..23860808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)