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cuzd1.1 CUB and zona pellucida-like domains 1, tandem duplicate 1 [ Danio rerio (zebrafish) ]

Gene ID: 556215, updated on 12-Sep-2024

Summary

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Official Symbol
cuzd1.1provided by ZNC
Official Full Name
CUB and zona pellucida-like domains 1, tandem duplicate 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-131122-16
See related
AllianceGenome:ZFIN:ZDB-GENE-131122-16
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb66a12; wu:fb66a12; si:ch211-208g24.5
Summary
Orthologous to human CUZD1 (CUB and zona pellucida like domains 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See cuzd1.1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (21871978..21877466, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (21850204..21860189, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene CUB and zona pellucida-like domains 1, tandem duplicate 2 Neighboring gene CUB and zona pellucida-like domain-containing protein 1 Neighboring gene CUB and zona pellucida-like domain-containing protein 1 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a Neighboring gene HtrA serine peptidase 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA integration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
retrovirus-related Pol polyprotein from transposon opus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    21871978..21877466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467402.2 → XP_021323077.1  retrovirus-related Pol polyprotein from transposon opus

    UniProtKB/TrEMBL
    A0A8M9P0J8
    Conserved Domains (4) summary
    COG2801
    Location:1252 → 1486
    Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]
    cd01647
    Location:745 → 921
    RT_LTR; Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of ...
    cd09274
    Location:1021 → 1143
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
    pfam00665
    Location:1342 → 1454
    rve; Integrase core domain
Nucleotide Protein
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