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zgc:111868 zgc:111868 [ Danio rerio (zebrafish) ]

Gene ID: 556628, updated on 17-Sep-2024

Summary

Official Symbol
zgc:111868provided by ZNC
Official Full Name
zgc:111868provided by ZNC
Primary source
ZFIN:ZDB-GENE-050809-138
See related
Ensembl:ENSDARG00000099060 AllianceGenome:ZFIN:ZDB-GENE-050809-138
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd14f12; wu:fd14f12; si:ch73-207h17.1
Orthologs
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Genomic context

See zgc:111868 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (42364157..42368289, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (42208872..42212999, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496840 Neighboring gene transcription elongation regulator 1 like Neighboring gene uncharacterized LOC137496841 Neighboring gene si:ch211-221j21.3 Neighboring gene glutaredoxin 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC111868

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC556628

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423535.1NP_001410464.1  uncharacterized protein LOC556628 precursor

    Status: VALIDATED

    Source sequence(s)
    CU607079
    UniProtKB/TrEMBL
    A0A0R4ID77, A0A8M2B2I6
    Related
    ENSDARP00000131087.1, ENSDART00000171075.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    42364157..42368289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001034970.1: Suppressed sequence

    Description
    NM_001034970.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.