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si:ch1073-287p18.1 si:ch1073-287p18.1 [ Danio rerio (zebrafish) ]

Gene ID: 556730, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch1073-287p18.1provided by ZNC
Official Full Name
si:ch1073-287p18.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-80
See related
Ensembl:ENSDARG00000075765 AllianceGenome:ZFIN:ZDB-GENE-081104-80
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C8orf82 (chromosome 8 open reading frame 82). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:ch1073-287p18.1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (52332759..52338810, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (52520258..52526925, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene rhophilin, Rho GTPase binding protein 1 Neighboring gene nicotinate phosphoribosyltransferase Neighboring gene collagen alpha-3(IV) chain-like Neighboring gene Rho GTPase activating protein 39 Neighboring gene GDP-L-fucose synthase, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0598 protein C8orf82 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144787.1 → NP_001138259.1  UPF0598 protein C8orf82 homolog isoform 2

    Status: PROVISIONAL

    Source sequence(s)
    CU633982
    UniProtKB/TrEMBL
    A0A8M1NT22, B8JMG5
    Related
    ENSDARP00000117975.1, ENSDART00000132941.2
    Conserved Domains (1) summary
    pfam14956
    Location:21 → 60
    DUF4505; Domain of unknown function (DUF4505)

  2. NM_001430832.1 → NP_001417761.1  UPF0598 protein C8orf82 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    CU633982
    UniProtKB/TrEMBL
    A0A8M3ALU3, B8JMG6
    Related
    ENSDARP00000100113.3, ENSDART00000109735.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    52332759..52338810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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