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tmcc3 transmembrane and coiled-coil domain family 3 [ Danio rerio (zebrafish) ]

Gene ID: 556763, updated on 2-Nov-2024

Summary

Official Symbol
tmcc3provided by ZNC
Official Full Name
transmembrane and coiled-coil domain family 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1811
See related
Ensembl:ENSDARG00000045525 AllianceGenome:ZFIN:ZDB-GENE-030131-1811
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb81d10; wu:fb83h01; wu:fk68a09; wu:fl22e07; si:dkey-183c16.4
Summary
Predicted to be located in membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC3 (transmembrane and coiled-coil domain family 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See tmcc3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (25756111..25796828, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (25766913..25807630, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA thioesterase 18 Neighboring gene laminin, beta 1b Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 Neighboring gene nuclear receptor subfamily 2, group C, member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane and coiled-coil domain protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044813.2NP_001038278.1  transmembrane and coiled-coil domain protein 3

    See identical proteins and their annotated locations for NP_001038278.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133824
    UniProtKB/TrEMBL
    A3KNG4, Q5RH38
    Related
    ENSDARP00000107843.2, ENSDART00000122881.4
    Conserved Domains (1) summary
    pfam10267
    Location:64462
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    25756111..25796828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394556.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    240952..281614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)