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si:ch211-195b15.7 si:ch211-195b15.7 [ Danio rerio (zebrafish) ]

Gene ID: 557783, updated on 17-Sep-2024

Summary

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Official Symbol
si:ch211-195b15.7provided by ZNC
Official Full Name
si:ch211-195b15.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-183
See related
Ensembl:ENSDARG00000017579 AllianceGenome:ZFIN:ZDB-GENE-131121-183
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fk57g06
Summary
Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-195b15.7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32459183..32472184, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32327025..32340487, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene proline rich Gla (G-carboxyglutamic acid) 2 Neighboring gene proline rich 12b Neighboring gene insulin Neighboring gene SR-related CTD-associated factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G-protein alpha-subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables guanyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
synembryn-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32459183..32472184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299571.4 → XP_009297846.1  synembryn-A isoform X3

    UniProtKB/TrEMBL
    A0A8M3AQQ1
    Conserved Domains (1) summary
    pfam10165
    Location:249 → 655
    Ric8; Guanine nucleotide exchange factor synembryn

  2. XM_680904.9 → XP_685996.5  synembryn-A isoform X2

    UniProtKB/TrEMBL
    A0A8N7T5G4, X1WG58
    Related
    ENSDARP00000129213.1, ENSDART00000156280.2
    Conserved Domains (1) summary
    pfam10165
    Location:255 → 661
    Ric8; Guanine nucleotide exchange factor synembryn

  3. XM_009299570.4 → XP_009297845.1  synembryn-A isoform X1

    UniProtKB/TrEMBL
    A0A8M3AY41
    Conserved Domains (1) summary
    pfam10165
    Location:291 → 697
    Ric8; Guanine nucleotide exchange factor synembryn

  4. XM_068219112.1 → XP_068075213.1  synembryn-A isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials