U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

slain2 SLAIN motif family, member 2 [ Danio rerio (zebrafish) ]

Gene ID: 557946, updated on 28-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
slain2provided by ZNC
Official Full Name
SLAIN motif family, member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-251
See related
Ensembl:ENSDARG00000032114 AllianceGenome:ZFIN:ZDB-GENE-041014-251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-90m5.3
Summary
Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. Orthologous to human SLAIN2 (SLAIN motif family member 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See slain2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (23446347..23472337, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (23547143..23573266, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-90m5.4 Neighboring gene solute carrier family 10 member 4 Neighboring gene zygote arrest 1 Neighboring gene anaphase promoting complex subunit 4 Neighboring gene palladin, cytoskeletal associated protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in microtubule nucleation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of microtubule polymerization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
colocalizes_with microtubule plus-end IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SLAIN motif-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044846.1 → NP_001038311.1  SLAIN motif-containing protein 2

    Status: PROVISIONAL

    Source sequence(s)
    BX537133
    UniProtKB/TrEMBL
    A0A8N7UY82, Q5RHE6
    Related
    ENSDARP00000108203.2, ENSDART00000123222.4
    Conserved Domains (1) summary
    pfam15301
    Location:154 → 567
    SLAIN; SLAIN motif-containing family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    23446347..23472337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352484.3 → XP_017207973.1  SLAIN motif-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z398

  2. XM_017352483.3 → XP_017207972.1  SLAIN motif-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M6YWM6

  3. XM_009294668.4 → XP_009292943.1  SLAIN motif-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AW67
    Conserved Domains (1) summary
    pfam15301
    Location:154 → 607
    SLAIN; SLAIN motif-containing family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools