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suco SUN domain containing ossification factor [ Danio rerio (zebrafish) ]

Gene ID: 558218, updated on 27-Mar-2024

Summary

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Official Symbol
sucoprovided by ZNC
Official Full Name
SUN domain containing ossification factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2941
See related
Ensembl:ENSDARG00000016532 AllianceGenome:ZFIN:ZDB-GENE-030131-2941
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc22a08; wu:fc22a08; si:ch211-184m19.1
Summary
Predicted to be involved in regulation of bone remodeling. Predicted to be active in cytoplasm and membrane. Orthologous to human SUCO (SUN domain containing ossification factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See suco in Genome Data Viewer
Location:
chromosome: 20
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (14684528..14781813, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (14788551..14885827, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-69c1.1 Neighboring gene secernin 2 Neighboring gene uncharacterized LOC101887022 Neighboring gene transmembrane p24 trafficking protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution and genomic organization of muscle microRNAs in fish genomes. Nachtigall PG, et al. BMC Evol Biol, 2014 Sep 25. PMID 25253178, Free PMC Article
  2. Evolutionary evidence of tumor necrosis factor super family members in the Japanese pufferfish (Takifugu rubripes): Comprehensive genomic identification and expression analysis. Biswas G, et al. Mar Genomics, 2015 Aug. PMID 25792259
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in regulation of bone remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SUN domain-containing ossification factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    14684528..14781813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468608.1 → XP_021324283.1  SUN domain-containing ossification factor isoform X4

    UniProtKB/TrEMBL
    A0A8M9PC58
    Conserved Domains (4) summary
    pfam03938
    Location:1031 → 1105
    OmpH; Outer membrane protein (OmpH-like)
    pfam07738
    Location:386 → 515
    Sad1_UNC; Sad1 / UNC-like C-terminal
    cl26464
    Location:132 → 325
    Atrophin-1; Atrophin-1 family
    cl27169
    Location:50 → 201
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

  2. XM_005160445.4 → XP_005160502.1  SUN domain-containing ossification factor isoform X6

    UniProtKB/TrEMBL
    A0A8M2B7A0, F1Q595
    Related
    ENSDARP00000015683.7, ENSDART00000026969.10
    Conserved Domains (1) summary
    pfam07738
    Location:349 → 478
    Sad1_UNC; Sad1 / UNC-like C-terminal

  3. XM_681409.9 → XP_686501.6  SUN domain-containing ossification factor isoform X5

    UniProtKB/TrEMBL
    A0A2R8QLX4, A0A8N7T788
    Related
    ENSDARP00000156448.1, ENSDART00000179912.1
    Conserved Domains (1) summary
    pfam07738
    Location:386 → 508
    Sad1_UNC; Sad1 / UNC-like C-terminal

  4. XM_021468609.1 → XP_021324284.1  SUN domain-containing ossification factor isoform X7

    UniProtKB/TrEMBL
    A0A8M9PHS3
    Conserved Domains (4) summary
    pfam03938
    Location:1031 → 1105
    OmpH; Outer membrane protein (OmpH-like)
    pfam07738
    Location:386 → 515
    Sad1_UNC; Sad1 / UNC-like C-terminal
    cl26464
    Location:132 → 325
    Atrophin-1; Atrophin-1 family
    cl27169
    Location:50 → 201
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

  5. XM_009294611.3 → XP_009292886.1  SUN domain-containing ossification factor isoform X2

    UniProtKB/TrEMBL
    A0A8M3ALE3
    Conserved Domains (1) summary
    pfam07738
    Location:386 → 515
    Sad1_UNC; Sad1 / UNC-like C-terminal

  6. XM_021468607.1 → XP_021324282.1  SUN domain-containing ossification factor isoform X3

    UniProtKB/TrEMBL
    A0A8M9P2X0
    Conserved Domains (4) summary
    pfam03938
    Location:1031 → 1105
    OmpH; Outer membrane protein (OmpH-like)
    pfam07738
    Location:386 → 515
    Sad1_UNC; Sad1 / UNC-like C-terminal
    cl26464
    Location:132 → 325
    Atrophin-1; Atrophin-1 family
    cl27169
    Location:50 → 201
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

  7. XM_005160444.4 → XP_005160501.1  SUN domain-containing ossification factor isoform X1

    UniProtKB/TrEMBL
    A0A0R4IAV9, A0A8M2B794
    Related
    ENSDARP00000131810.1, ENSDART00000160481.2
    Conserved Domains (1) summary
    pfam07738
    Location:386 → 515
    Sad1_UNC; Sad1 / UNC-like C-terminal
Nucleotide Protein Strain
Heading Accession and Version

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