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slc20a2 solute carrier family 20 member 2 [ Danio rerio (zebrafish) ]

Gene ID: 558346, updated on 17-Sep-2024

Summary

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Official Symbol
slc20a2provided by ZNC
Official Full Name
solute carrier family 20 member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-828
See related
Ensembl:ENSDARG00000060796 AllianceGenome:ZFIN:ZDB-GENE-060929-828
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi23g11; wu:fi23g11; zgc:152990
Summary
Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to act upstream of or within phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human SLC20A2 (solute carrier family 20 member 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See slc20a2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (29770090..29851636, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (29760860..29842488, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 36 Neighboring gene mitogen-activated protein kinase 4 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 3 Neighboring gene excision repair cross-complementation group 6-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comparison between Timelines of Transcriptional Regulation in Mammals, Birds, and Teleost Fish Somitogenesis. Fongang B, et al. PLoS One, 2016. PMID 27192554, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC152990

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables symporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in phosphate ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within phosphate ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sodium ion transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sodium-dependent phosphate transporter 2
Names
solute carrier family 20 (phosphate transporter), member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077546.1 → NP_001071014.1  sodium-dependent phosphate transporter 2

    See identical proteins and their annotated locations for NP_001071014.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124206
    UniProtKB/TrEMBL
    Q08CK2
    Conserved Domains (2) summary
    COG0306
    Location:7 → 488
    PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]
    pfam01384
    Location:382 → 480
    PHO4; Phosphate transporter family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    29770090..29851636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167168.5 → XP_005167225.1  sodium-dependent phosphate transporter 2 isoform X1

    See identical proteins and their annotated locations for XP_005167225.1

    UniProtKB/TrEMBL
    A0A0R4ITC6, A0A8M9Q9Q1, F1Q836, F8W3B1
    Related
    ENSDARP00000124436.1, ENSDART00000149297.3
    Conserved Domains (2) summary
    COG0306
    Location:7 → 225
    PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]
    pfam01384
    Location:501 → 647
    PHO4; Phosphate transporter family

  2. XM_005167171.5 → XP_005167228.1  sodium-dependent phosphate transporter 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BEK1
    Conserved Domains (2) summary
    COG0306
    Location:485 → 654
    PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]
    pfam01384
    Location:548 → 646
    PHO4; Phosphate transporter family

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395274.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    269922..313899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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