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si:dkey-226l10.6 si:dkey-226l10.6 [ Danio rerio (zebrafish) ]

Gene ID: 558387, updated on 19-Jun-2024

Summary

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Official Symbol
si:dkey-226l10.6provided by ZNC
Official Full Name
si:dkey-226l10.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1550
See related
Ensembl:ENSDARG00000087483 AllianceGenome:ZFIN:ZDB-GENE-030131-1550
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb74d07; wu:fb74d07
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:dkey-226l10.6 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (24170852..24176572)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (24025647..24031240)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene MAP7 domain containing 2b Neighboring gene eukaryotic translation initiation factor 1A X-linked b Neighboring gene ribosomal protein S6 kinase, polypeptide 3b Neighboring gene pyruvate dehydrogenase E1 subunit alpha 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
replication initiator 1; zinc finger protein 845

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    24170852..24176572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_681589.8 → XP_686681.1  replication initiator 1

    UniProtKB/TrEMBL
    A0A8N7UQS9, E7F1W7
    Related
    ENSDARP00000109040.2, ENSDART00000127842.3
    Conserved Domains (2) summary
    sd00017
    Location:229 → 249
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05485
    Location:4 → 87
    THAP; THAP domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395176.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    208743..214361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473788.1 → XP_021329463.1  zinc finger protein 845

    UniProtKB/TrEMBL
    A0A8M9PR20
    Conserved Domains (3) summary
    PHA00733
    Location:257 → 309
    PHA00733; hypothetical protein
    sd00017
    Location:229 → 249
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05485
    Location:5 → 86
    THAP; THAP domain
Nucleotide Protein
Heading Accession and Version

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