U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rrn3 RRN3 homolog, RNA polymerase I transcription factor [ Danio rerio (zebrafish) ]

Gene ID: 558718, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
rrn3provided by ZNC
Official Full Name
RRN3 homolog, RNA polymerase I transcription factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080225-1
See related
Ensembl:ENSDARG00000102997 AllianceGenome:ZFIN:ZDB-GENE-080225-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6893790; si:dkeyp-72e1.8
Summary
Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase I promoter. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rrn3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (36589477..36602383, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (36447619..36460813, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene periplakin Neighboring gene si:dkeyp-72e1.9 Neighboring gene si:dkeyp-72e1.6 Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 Neighboring gene MPV17 mitochondrial membrane protein like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA polymerase I core binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase I general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase I promoter IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase I-specific transcription initiation factor RRN3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    36589477..36602383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_701870.7 → XP_706962.2  RNA polymerase I-specific transcription initiation factor RRN3

    See identical proteins and their annotated locations for XP_706962.2

    UniProtKB/TrEMBL
    A0A0R4ICI5, A0A8N7UW46
    Related
    ENSDARP00000131383.1, ENSDART00000165414.2
    Conserved Domains (1) summary
    pfam05327
    Location:23 → 547
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

  2. XM_005164109.5 → XP_005164166.1  RNA polymerase I-specific transcription initiation factor RRN3

    See identical proteins and their annotated locations for XP_005164166.1

    UniProtKB/TrEMBL
    A0A0R4ICI5, A0A8N7UW46
    Related
    ENSDARP00000140362.1, ENSDART00000162396.2
    Conserved Domains (1) summary
    pfam05327
    Location:23 → 547
    RRN3; RNA polymerase I specific transcription initiation factor RRN3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.