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si:dkey-30c15.13 si:dkey-30c15.13 [ Danio rerio (zebrafish) ]

Gene ID: 558731, updated on 17-Aug-2024

Summary

Official Symbol
si:dkey-30c15.13provided by ZNC
Official Full Name
si:dkey-30c15.13provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-73
See related
Ensembl:ENSDARG00000114258 AllianceGenome:ZFIN:ZDB-GENE-060503-73
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM253 (transmembrane protein 253). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See si:dkey-30c15.13 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (7395164..7400086, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (7436229..7441151, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 10 Neighboring gene synaptotagmin Ib Neighboring gene si:dkey-30c15.12 Neighboring gene si:dkey-30c15.12

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC558731

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044872.2NP_001038337.1  uncharacterized protein LOC558731

    See identical proteins and their annotated locations for NP_001038337.1

    Status: PREDICTED

    Source sequence(s)
    BC134086
    UniProtKB/TrEMBL
    A0A2R8Q702, Q1LX35
    Related
    ENSDARP00000092024.3, ENSDART00000101250.4
    Conserved Domains (1) summary
    pfam04103
    Location:61133
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    7395164..7400086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395003.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    39102..44019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)