U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ranbp9 RAN binding protein 9 [ Danio rerio (zebrafish) ]

Gene ID: 558976, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ranbp9provided by ZNC
Official Full Name
RAN binding protein 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-021030-5
See related
Ensembl:ENSDARG00000061048 AllianceGenome:ZFIN:ZDB-GENE-021030-5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb457; zgc:158650
Summary
Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in adaxial cell; brain; olfactory placode; retina; and somite. Orthologous to human RANBP9 (RAN binding protein 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (31806660..31826911)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (31823442..31843693)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene reticulophagy regulator 1 Neighboring gene ring finger protein 182 Neighboring gene nucleolar protein 7 Neighboring gene ependymin related 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Mind Bomb-Binding Partner RanBP9 Plays a Contributory Role in Retinal Development. Yoo KW, et al. Mol Cells, 2017 Apr. PMID 28359144, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ran-binding protein 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080571.2 → NP_001074040.1  ran-binding protein 9

    See identical proteins and their annotated locations for NP_001074040.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129352
    UniProtKB/Swiss-Prot
    A1L252
    Related
    ENSDARP00000081043.4, ENSDART00000086608.6
    Conserved Domains (5) summary
    smart00667
    Location:246 → 277
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:285 → 341
    CTLH; C-terminal to LisH motif
    smart00757
    Location:484 → 581
    CRA; CT11-RanBPM
    pfam10607
    Location:285 → 576
    CLTH; CTLH/CRA C-terminal to LisH motif domain
    cd12909
    Location:71 → 213
    SPRY_RanBP9_10; SPRY domain in Ran binding proteins 9 and 10

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    31806660..31826911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L252.1 GenPept UniProtKB/Swiss-Prot:A1L252

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous