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tmigd1 transmembrane and immunoglobulin domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 559127, updated on 12-Sep-2024

Summary

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Official Symbol
tmigd1provided by ZNC
Official Full Name
transmembrane and immunoglobulin domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-080303-6
See related
Ensembl:ENSDARG00000007040 AllianceGenome:ZFIN:ZDB-GENE-080303-6
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sc:d157; sc:d810
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMIGD1 (transmembrane and immunoglobulin domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See tmigd1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (39925813..39931417, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (39902429..39907862, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene mitochondrial rRNA methyltransferase 3b Neighboring gene PITP-less RdgB-like protein Neighboring gene uncharacterized LOC108180812 Neighboring gene solute carrier family 47 member 1 Neighboring gene solute carrier family 47 member 2, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Histological, biochemical and transcriptomic analyses reveal liver damage in zebrafish (Danio rerio) exposed to phenanthrene. Mai Y, et al. Comp Biochem Physiol C Toxicol Pharmacol, 2019 Nov. PMID 31374294
  2. The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). Lončar J, et al. Sci Rep, 2016 Jun 30. PMID 27357367, Free PMC Article
  3. Evolution of the tbx6/16 subfamily genes in vertebrates: insights from zebrafish. Ahn D, et al. Mol Biol Evol, 2012 Dec. PMID 22915831
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transmembrane and immunoglobulin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098248.2 → NP_001091718.2  transmembrane and immunoglobulin domain-containing protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    CABZ01065292
    Related
    ENSDARP00000151307.1, ENSDART00000180010.1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    39925813..39931417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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