U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

unm_hu7910 un-named hu7910 [ Danio rerio (zebrafish) ]

Gene ID: 559236, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
unm_hu7910provided by ZNC
Official Full Name
un-named hu7910provided by ZNC
Primary source
ZFIN:ZDB-GENE-120727-22
See related
Ensembl:ENSDARG00000078703 AllianceGenome:ZFIN:ZDB-GENE-120727-22
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable peptidyl-aspartic acid 3-dioxygenase activity. Predicted to act upstream of or within peptidyl-aspartic acid hydroxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cholangiocarcinoma. Orthologous to human ASPH (aspartate beta-hydroxylase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (58186633..58251443, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (57884193..57949025, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene ankyrin 2b, neuronal Neighboring gene neutral sphingomyelinase (N-SMase) activation associated factor Neighboring gene gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) Neighboring gene syndecan binding protein (syntenin) Neighboring gene cytochrome P450, family 7, subfamily A, polypeptide 1b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase; calponin homology domain-containing protein DDB_G0272472
Names
unm_sa2365
XP_009301795.1
XP_021333678.1
XP_068078843.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    58186633..58251443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478003.2 → XP_021333678.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A2R8QJF6, A0A8M9Q2V6
    Related
    ENSDARP00000152441.1, ENSDART00000185189.1
    Conserved Domains (4) summary
    pfam05279
    Location:26 → 253
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:264 → 290
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:433 → 586
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26002
    Location:180 → 363
    TPR_11; TPR repeat

  2. XM_068222742.1 → XP_068078843.1  calponin homology domain-containing protein DDB_G0272472 isoform X1

  3. XM_009303520.4 → XP_009301795.1  calponin homology domain-containing protein DDB_G0272472 isoform X2

    See identical proteins and their annotated locations for XP_009301795.1

    UniProtKB/TrEMBL
    A0A8M3B1J7
    Conserved Domains (2) summary
    pfam05279
    Location:29 → 273
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:298 → 589
    TPH; Trichohyalin-plectin-homology domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools