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fam13a family with sequence similarity 13 member A [ Danio rerio (zebrafish) ]

Gene ID: 559330, updated on 17-Sep-2024

Summary

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Official Symbol
fam13aprovided by ZNC
Official Full Name
family with sequence similarity 13 member Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-102
See related
AllianceGenome:ZFIN:ZDB-GENE-050208-102
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc31g04; im:7139293; wu:fc31g04
Summary
Is expressed in several structures, including eye; lens placode; peripheral olfactory organ; solid lens vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease. Orthologous to human FAM13A (family with sequence similarity 13 member A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See fam13a in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (50694294..50791270, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (50050038..50147474, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 56.1 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 3 Neighboring gene zgc:154142 Neighboring gene GPRIN family member 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Patterns of alternative splicing in response to cold acclimation in fish. Healy TM, et al. J Exp Biol, 2019 Mar 7. PMID 30692167
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein FAM13A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    50694294..50791270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221728.1 → XP_068077829.1  protein FAM13A isoform X2

  2. XM_068221737.1 → XP_068077838.1  protein FAM13A isoform X5

  3. XM_068221730.1 → XP_068077831.1  protein FAM13A isoform X3

  4. XM_068221735.1 → XP_068077836.1  protein FAM13A isoform X4

  5. XM_017356507.3 → XP_017211996.1  protein FAM13A isoform X1

    UniProtKB/TrEMBL
    A0A8M6YYR3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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