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si:dkey-117n7.5 si:dkey-117n7.5 [ Danio rerio (zebrafish) ]

Gene ID: 559444, updated on 2-Nov-2024

Summary

Official Symbol
si:dkey-117n7.5provided by ZNC
Official Full Name
si:dkey-117n7.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-331
See related
Ensembl:ENSDARG00000089640 AllianceGenome:ZFIN:ZDB-GENE-060503-331
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable receptor antagonist activity and transforming growth factor beta binding activity. Predicted to be involved in transforming growth factor beta receptor signaling pathway. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See si:dkey-117n7.5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (15963158..15975197)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (15969728..15976155)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and guanylate kinase domain containing Neighboring gene collagen type VII alpha 1-like Neighboring gene urocortin 3, like Neighboring gene COPI coat complex subunit gamma 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables receptor antagonist activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
enables transforming growth factor beta binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in transforming growth factor beta receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC559444

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044894.1NP_001038359.1  uncharacterized protein LOC559444

    Status: PREDICTED

    Source sequence(s)
    BX004864
    UniProtKB/TrEMBL
    A0A8M1N9I2, Q1LYP0
    Related
    ENSDARP00000092348.4, ENSDART00000101575.5
    Conserved Domains (1) summary
    pfam00014
    Location:113163
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    15963158..15975197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068219657.1XP_068075758.1  uncharacterized protein LOC559444 isoform X1