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tnrc18 trinucleotide repeat containing 18 [ Danio rerio (zebrafish) ]

Gene ID: 559514, updated on 2-Nov-2024

Summary

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Official Symbol
tnrc18provided by ZNC
Official Full Name
trinucleotide repeat containing 18provided by ZNC
Primary source
ZFIN:ZDB-GENE-100326-1
See related
Ensembl:ENSDARG00000077052 AllianceGenome:ZFIN:ZDB-GENE-100326-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable chromatin binding activity. Is expressed in hypothalamus and telencephalon. Orthologous to human TNRC18 (trinucleotide repeat containing 18). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See tnrc18 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (40407451..40487683)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (40265578..40346988)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit f Neighboring gene solute carrier family 29 member 4a Neighboring gene actin, beta 2 Neighboring gene fascin actin-bundling protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A new evolutionary model for the vertebrate actin family including two novel groups. Witjes L, et al. Mol Phylogenet Evol, 2019 Dec. PMID 31560986
  2. Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Armant O, et al. Dev Biol, 2013 Aug 15. PMID 23684812, Free PMC Article
  3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
trinucleotide repeat-containing gene 18 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    40407451..40487683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164179.4 → XP_005164236.1  trinucleotide repeat-containing gene 18 protein isoform X3

    UniProtKB/TrEMBL
    A0A8M2BBN2
    Conserved Domains (1) summary
    cd04714
    Location:2773 → 2917
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

  2. XM_005164178.4 → XP_005164235.1  trinucleotide repeat-containing gene 18 protein isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBE3, X1WHA2
    Related
    ENSDARP00000129614.1, ENSDART00000155112.3
    Conserved Domains (1) summary
    cd04714
    Location:2784 → 2928
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

  3. XM_002661214.6 → XP_002661260.2  trinucleotide repeat-containing gene 18 protein isoform X4

    UniProtKB/TrEMBL
    A0A8M1RDF0
    Related
    ENSDARP00000094262.4, ENSDART00000103486.5
    Conserved Domains (1) summary
    cd04714
    Location:2772 → 2916
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

  4. XM_068219343.1 → XP_068075444.1  trinucleotide repeat-containing gene 18 protein isoform X2

Nucleotide Protein
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