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bmb brambleberry [ Danio rerio (zebrafish) ]

Gene ID: 559540, updated on 28-Oct-2024

Summary

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Official Symbol
bmbprovided by ZNC
Official Full Name
brambleberryprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5577
See related
Ensembl:ENSDARG00000096603 AllianceGenome:ZFIN:ZDB-GENE-030131-5577
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi04f09; wu:fi04f09
Summary
Involved in pronuclear fusion. Acts upstream of or within karyomere membrane fusion. Predicted to be located in nuclear membrane. Is expressed in several structures, including blastomere. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See bmb in Genome Data Viewer
Location:
chromosome: 25
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (36292465..36310015)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (35742746..35760296)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489387 Neighboring gene si:ch211-113a14.6 Neighboring gene si:ch211-113a14.7 Neighboring gene solute carrier family 7 member 10b Neighboring gene histone H3 Neighboring gene FA core complex associated protein 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Dynamic assembly of brambleberry mediates nuclear envelope fusion during early development. Abrams EW, et al. Cell, 2012 Aug 3. PMID 22863006, Free PMC Article
  2. Sample Preparation and Analysis of RNASeq-based Gene Expression Data from Zebrafish. Hostelley TL, et al. J Vis Exp, 2017 Oct 27. PMID 29155729, Free PMC Article
  3. Molecular genetics of maternally-controlled cell divisions. Abrams EW, et al. PLoS Genet, 2020 Apr. PMID 32267837, Free PMC Article
  4. Understanding the complexity of epimorphic regeneration in zebrafish caudal fin tissue: A transcriptomic and proteomic approach. Banu S, et al. Genomics, 2022 Mar. PMID 35134499
  5. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within karyogamy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within karyomere membrane fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pronuclear fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pronuclear fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein brambleberry

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270554.1 → NP_001257483.1  protein brambleberry precursor

    See identical proteins and their annotated locations for NP_001257483.1

    Status: PROVISIONAL

    Source sequence(s)
    JX073281
    UniProtKB/Swiss-Prot
    I6V1W0
    Related
    ENSDARP00000126692.1, ENSDART00000152329.3
    Conserved Domains (1) summary
    cl00459
    Location:224 → 290
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    36292465..36310015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
I6V1W0.1 GenPept UniProtKB/Swiss-Prot:I6V1W0

Gene LinkOut

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