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tssc4 tumor suppressing subtransferable candidate 4 [ Danio rerio (zebrafish) ]

Gene ID: 559769, updated on 28-Oct-2024

Summary

Official Symbol
tssc4provided by ZNC
Official Full Name
tumor suppressing subtransferable candidate 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-060825-263
See related
Ensembl:ENSDARG00000036144 AllianceGenome:ZFIN:ZDB-GENE-060825-263
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153225
Summary
Predicted to enable molecular sequestering activity. Predicted to be involved in spliceosomal tri-snRNP complex assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of U5 snRNP. Predicted to be active in cytoplasm and nucleus. Orthologous to human TSSC4 (tumor suppressing subtransferable candidate 4). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See tssc4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (32897732..32899840)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (32626562..32628690)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 6b Neighboring gene anoctamin 5b Neighboring gene anoctamin 9b Neighboring gene plakophilin 3b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC153225

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular sequestering activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in spliceosomal tri-snRNP complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
part_of U5 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
U5 small nuclear ribonucleoprotein TSSC4
Names
protein TSSC4
tumor-suppressing subchromosomal transferable fragment 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045848.1NP_001039313.1  U5 small nuclear ribonucleoprotein TSSC4

    See identical proteins and their annotated locations for NP_001039313.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122196
    UniProtKB/Swiss-Prot
    Q0P4A6
    UniProtKB/TrEMBL
    B2GNS7
    Related
    ENSDARP00000069747.4, ENSDART00000075263.5
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    32897732..32899840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168889.5XP_005168946.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168946.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Related
    ENSDARP00000113370.1, ENSDART00000133584.3
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  2. XM_005168886.5XP_005168943.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168943.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  3. XM_005168890.5XP_005168947.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168947.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Related
    ENSDARP00000154709.1, ENSDART00000188487.1
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  4. XM_005168885.5XP_005168942.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168942.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  5. XM_005168888.5XP_005168945.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168945.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  6. XM_005168884.5XP_005168941.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168941.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4
  7. XM_005168887.5XP_005168944.1  U5 small nuclear ribonucleoprotein TSSC4 isoform X1

    See identical proteins and their annotated locations for XP_005168944.1

    UniProtKB/TrEMBL
    A0A8M2BG61, F1Q8E9
    Conserved Domains (1) summary
    pfam15264
    Location:86209
    TSSC4; Tumour suppressing sub-chromosomal transferable candidate 4