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r3hdm1 R3H domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 560062, updated on 27-Mar-2024

Summary

Official Symbol
r3hdm1provided by ZNC
Official Full Name
R3H domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7119
See related
Ensembl:ENSDARG00000101458 AllianceGenome:ZFIN:ZDB-GENE-030131-7119
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj35h04; fk85b04; sb:eu460; id:ibd5043; wu:fj35h04; wu:fk85b04; si:ch73-60i13.2
Summary
Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See r3hdm1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (12338506..12359257)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (12318706..12366507)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene cyclin T2b Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene microRNA 128-1 Neighboring gene uncharacterized LOC103909565 Neighboring gene Rho family GTPase 3a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
R3H domain-containing protein 1; uncharacterized protein r3hdm1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    12338506..12359257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
  2. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    12361252..12391284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009296206.3XP_009294481.1  uncharacterized protein r3hdm1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B5F8
  2. XM_009296207.3XP_009294482.1  uncharacterized protein r3hdm1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AMX8

RNA

  1. XR_002456469.1 RNA Sequence

  2. XR_002456470.1 RNA Sequence

  3. XR_001797231.2 RNA Sequence