zgc:162698 zgc:162698 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:162698provided by ZNC
Official Full Name: zgc:162698provided by ZNC
Primary source: ZFIN:ZDB-GENE-041111-185
See related: Ensembl:ENSDARG00000074967 AllianceGenome:ZFIN:ZDB-GENE-041111-185
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7143321; wu:fc14d01
Summary: Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87A (transmembrane protein 87A) and TMEM87B (transmembrane protein 87B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (29092527..29114449, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (29159651..29181573, complement)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fc14d01.x1 (e-PCR)
- UniSTS:192679

fc14d01.x1 (e-PCR)
- UniSTS:192680

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in retrograde transport, endosome to Golgi	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Transmembrane protein 87A-like; transmembrane protein 87A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089384.2 → NP_001082853.2 Transmembrane protein 87A-like precursor

Status: VALIDATED

Source sequence(s)

BX004776

UniProtKB/TrEMBL

A0A8M1NCS2, F1REF3

Related

ENSDARP00000100667.3, ENSDART00000109482.3

Conserved Domains (1) summary

pfam06814
Location:216 → 497

Lung_7-TM_R; Lung seven transmembrane receptor