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virma vir like m6A methyltransferase associated [ Danio rerio (zebrafish) ]

Gene ID: 560260, updated on 2-Nov-2024

Summary

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Official Symbol
virmaprovided by ZNC
Official Full Name
vir like m6A methyltransferase associatedprovided by ZNC
Primary source
ZFIN:ZDB-GENE-100922-238
See related
Ensembl:ENSDARG00000075824 AllianceGenome:ZFIN:ZDB-GENE-100922-238
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa20f07; wu:fa20f07; si:ch211-79l20.4
Summary
Predicted to be involved in mRNA modification. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Orthologous to human VIRMA (vir like m6A methyltransferase associated). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See virma in Genome Data Viewer
Location:
chromosome: 16
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26680489..26717597)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (26807050..26844155)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1 like 4B Neighboring gene uncharacterized LOC137487907 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene ring finger protein 41, like Neighboring gene RAD54 homolog B Neighboring gene fibrinogen silencer binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Many genes in fish have species-specific asymmetric rates of molecular evolution. Steinke D, et al. BMC Genomics, 2006 Feb 8. PMID 16466575, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA modification IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RNA N6-methyladenosine methyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein virilizer homolog; vir like m6A methyltransferase associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    26680489..26717597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158034.5 → XP_005158091.1  protein virilizer homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M2B4B7
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 254
    VIR_N; Virilizer, N-terminal

  2. XM_005158035.5 → XP_005158092.1  protein virilizer homolog isoform X2

    UniProtKB/TrEMBL
    A0A0R4IAI1, A0A8M2B4B0
    Related
    ENSDARP00000131427.1, ENSDART00000159064.3
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 254
    VIR_N; Virilizer, N-terminal

  3. XM_683656.9 → XP_688748.4  protein virilizer homolog isoform X3

    UniProtKB/TrEMBL
    A0A8N7T781
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 254
    VIR_N; Virilizer, N-terminal

  4. XM_068214141.1 → XP_068070242.1  protein virilizer homolog isoform X4

    Related
    ENSDARP00000115495.1, ENSDART00000142215.3
Nucleotide Protein Strain
Heading Accession and Version

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