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mettl15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine [ Danio rerio (zebrafish) ]

Gene ID: 560573, updated on 2-Nov-2024

Summary

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Official Symbol
mettl15provided by ZNC
Official Full Name
methyltransferase 15, mitochondrial 12S rRNA N4-cytidineprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-958
See related
Ensembl:ENSDARG00000089236 AllianceGenome:ZFIN:ZDB-GENE-130530-958
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Orthologous to several human genes including METTL15 (methyltransferase 15, mitochondrial 12S rRNA N4-cytidine). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See mettl15 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (32021669..32142420)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (31750519..31871270)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911387 Neighboring gene brain-derived neurotrophic factor Neighboring gene kinesin family member 18A Neighboring gene uncharacterized LOC103911388 Neighboring gene leucine-rich repeat containing G protein-coupled receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
12S rRNA N4-methylcytidine (m4C) methyltransferase
Names
methyltransferase like 15
zmp:0000000955
NP_001314836.1
XP_689063.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327907.1 → NP_001314836.1  12S rRNA N4-methylcytidine (m4C) methyltransferase

    Status: PROVISIONAL

    Source sequence(s)
    BX324119, CR354377
    UniProtKB/TrEMBL
    A0A1D5NT05, A0A8N7T6Y6
    Related
    ENSDARP00000142977.1, ENSDART00000173976.2
    Conserved Domains (1) summary
    PRK00050
    Location:67 → 401
    PRK00050; 16S rRNA m(4)C1402 methyltranserfase; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    32021669..32142420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_683971.7 → XP_689063.3  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

    See identical proteins and their annotated locations for XP_689063.3

    UniProtKB/TrEMBL
    A0A1D5NT05, A0A8N7T6Y6
    Conserved Domains (1) summary
    PRK00050
    Location:67 → 401
    PRK00050; 16S rRNA m(4)C1402 methyltranserfase; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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