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znf346 zinc finger protein 346 [ Danio rerio (zebrafish) ]

Gene ID: 560756, updated on 12-Sep-2024

Summary

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Official Symbol
znf346provided by ZNC
Official Full Name
zinc finger protein 346provided by ZNC
Primary source
ZFIN:ZDB-GENE-070209-152
See related
Ensembl:ENSDARG00000060695 AllianceGenome:ZFIN:ZDB-GENE-070209-152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7136406; wu:fc21c04; zgc:158750
Summary
Predicted to enable double-stranded RNA binding activity. Predicted to be located in nucleus. Orthologous to human ZNF346 (zinc finger protein 346). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See znf346 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (37090795..37108501)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (37405608..37423314)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene zgc:77151 Neighboring gene small Cajal body-specific RNA 14 Neighboring gene ubiquitin interaction motif containing 1 Neighboring gene fibroblast growth factor receptor 4 Neighboring gene nuclear receptor binding SET domain protein 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC158750

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables double-stranded RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
zinc finger protein 346
Names
Protein jaz

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081749.1 → NP_001075218.1  zinc finger protein 346

    Status: PROVISIONAL

    Source sequence(s)
    BC133150
    UniProtKB/Swiss-Prot
    A2RV29
    Related
    ENSDARP00000080221.5, ENSDART00000085786.6
    Conserved Domains (3) summary
    smart00451
    Location:177 → 211
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:182 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:232 → 254
    zf-met; Zinc-finger of C2H2 type

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    37090795..37108501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2RV29.1 GenPept UniProtKB/Swiss-Prot:A2RV29

Gene LinkOut

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