trir telomerase RNA component interacting RNase [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: trirprovided by ZNC
Official Full Name: telomerase RNA component interacting RNaseprovided by ZNC
Primary source: ZFIN:ZDB-GENE-111123-3
See related: Ensembl:ENSDARG00000104178 AllianceGenome:ZFIN:ZDB-GENE-111123-3
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gb:ct662408; si:ch73-152o7.1
Summary: Predicted to enable 3'-5' exonuclease activity and 5'-3' exonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, exonucleolytic. Orthologous to human TRIR (telomerase RNA component interacting RNase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (7822944..7840692)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (7937092..7948583)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb72c12.x1 (e-PCR)
- UniSTS:191092

fb72c12.x1 (e-PCR)
- UniSTS:191093

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 3'-5' exonuclease activity	IBA Inferred from Biological aspect of Ancestor more info
enables 3'-5' exonuclease activity	IEA Inferred from Electronic Annotation more info
enables 5'-3' exonuclease activity	IBA Inferred from Biological aspect of Ancestor more info
enables 5'-3' exonuclease activity	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: telomerase RNA component interacting RNase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.