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zar1l zygote arrest 1-like [ Danio rerio (zebrafish) ]

Gene ID: 561189, updated on 12-Sep-2024

Summary

Official Symbol
zar1lprovided by ZNC
Official Full Name
zygote arrest 1-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060810-119
See related
Ensembl:ENSDARG00000055973 AllianceGenome:ZFIN:ZDB-GENE-060810-119
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7158796
Summary
Predicted to enable mRNA binding activity involved in posttranscriptional gene silencing. Predicted to be involved in translation. Predicted to be active in cytoplasm. Orthologous to human ZAR1L (zygote arrest 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See zar1l in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (34000175..34002201, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (34056315..34058341, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene relaxin family peptide receptor 2a Neighboring gene furry homolog b (Drosophila) Neighboring gene uncharacterized LOC103911763 Neighboring gene klotho Neighboring gene serine protease HTRA2, mitochondrial-like Neighboring gene replication factor C (activator 1) 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within oogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199367.1NP_001186296.1  protein ZAR1-like

    See identical proteins and their annotated locations for NP_001186296.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ424466
    UniProtKB/TrEMBL
    A0A8M1NVI2, E5LCR6
    Related
    ENSDARP00000046598.4, ENSDART00000046599.6
    Conserved Domains (1) summary
    pfam13695
    Location:213298
    zf-3CxxC; Zinc-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    34000175..34002201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394793.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    423207..425228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)