ylpm1 YLP motif containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ylpm1provided by ZNC
Official Full Name: YLP motif containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2196
See related: Ensembl:ENSDARG00000043680 AllianceGenome:ZFIN:ZDB-GENE-030131-2196
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb99d08; wu:fb99d08; si:ch211-59d15.5
Summary: Predicted to be involved in regulation of telomere maintenance. Predicted to be active in nucleus. Orthologous to human YLPM1 (YLP motif containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (9171785..9200001, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (9184559..9212273, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb99d08.x1 (e-PCR)
- UniSTS:192007

fb99d08.x1 (e-PCR)
- UniSTS:192008

fd08d12.y1 (e-PCR)
- UniSTS:195044

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in regulation of telomere maintenance	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: YLP motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007131.7 Reference GRCz11 Primary Assembly

Range

9171785..9200001 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003200679.5 → XP_003200727.2 YLP motif-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8M1RP34

Conserved Domains (3) summary

pfam08430
Location:349 → 435

Forkhead_N; Forkhead N-terminal region

pfam08648
Location:1376 → 1486

DUF1777; Protein of unknown function (DUF1777)

pfam13671
Location:1523 → 1658

AAA_33; AAA domain
XM_005170154.4 → XP_005170211.2 YLP motif-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8M2BHJ2, F6P6X1

Related

ENSDARP00000064139.4, ENSDART00000064140.5

Conserved Domains (3) summary

pfam08430
Location:370 → 456

Forkhead_N; Forkhead N-terminal region

pfam08648
Location:1397 → 1507

DUF1777; Protein of unknown function (DUF1777)

pfam13671
Location:1544 → 1679

AAA_33; AAA domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001044956.1: Suppressed sequence

Description

NM_001044956.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: YLPM1 (GeneID:56252).