snx18a sorting nexin 18a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snx18aprovided by ZNC
Official Full Name: sorting nexin 18aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070705-339
See related: Ensembl:ENSDARG00000067713 AllianceGenome:ZFIN:ZDB-GENE-070705-339
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-193c22.4
Summary: Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to act upstream of or within mitotic cell cycle and protein transport. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX18 (sorting nexin 18). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (40272848..40292299, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (39672695..39692146, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatidylinositol binding	IBA Inferred from Biological aspect of Ancestor more info
enables phosphatidylinositol binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cleavage furrow formation	IBA Inferred from Biological aspect of Ancestor more info
involved_in endocytosis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within endocytosis	IEA Inferred from Electronic Annotation more info
involved_in endosomal transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mitotic cell cycle	IEA Inferred from Electronic Annotation more info
involved_in plasma membrane tubulation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasmic vesicle	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: sorting nexin-18a

Names: snag1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100006.1 → NP_001093476.1 sorting nexin-18a

See identical proteins and their annotated locations for NP_001093476.1

Status: PROVISIONAL

Source sequence(s)

BX571674

UniProtKB/TrEMBL

A0A2R8Q0F4, A5PMM5

Related

ENSDARP00000088296.4, ENSDART00000097525.5

Conserved Domains (3) summary

cd07286
Location:221 → 347

PX_SNX18; The phosphoinositide binding Phox Homology domain of Sorting Nexin 18

cd07670
Location:358 → 564

BAR_SNX18; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18

cl17036
Location:4 → 58

SH3; Src Homology 3 domain superfamily