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shtn2 shootin 2 [ Danio rerio (zebrafish) ]

Gene ID: 562403, updated on 12-Sep-2024

Summary

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Official Symbol
shtn2provided by ZNC
Official Full Name
shootin 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-561
See related
Ensembl:ENSDARG00000017504 AllianceGenome:ZFIN:ZDB-GENE-130530-561
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
shootin2; si:ch211-1o7.3; zmp:0000000558
Summary
Predicted to be located in several cellular components, including growth cone; lamellipodium; and perikaryon. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See shtn2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8722566..8763144, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8476610..8542747, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496077 Neighboring gene ankyrin repeat domain 53 Neighboring gene testis expressed 261 Neighboring gene uncharacterized LOC137496075 Neighboring gene ventral anterior homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Shootins mediate collective cell migration and organogenesis of the zebrafish posterior lateral line system. Urasaki A, et al. Sci Rep, 2019 Aug 21. PMID 31434971, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
shootin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    8722566..8763144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068222437.1 → XP_068078538.1  shootin-1 isoform X2

  2. XM_021477700.2 → XP_021333375.1  shootin-1 isoform X1

    UniProtKB/TrEMBL
    F1R1Q1
    Related
    ENSDARP00000093343.3, ENSDART00000102567.5
    Conserved Domains (1) summary
    cl25732
    Location:30 → 350
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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