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si:dkey-72l14.3 si:dkey-72l14.3 [ Danio rerio (zebrafish) ]

Gene ID: 562480, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-72l14.3provided by ZNC
Official Full Name
si:dkey-72l14.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-332
See related
Ensembl:ENSDARG00000061044 AllianceGenome:ZFIN:ZDB-GENE-060526-332
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable hyalurononglucosaminidase activity. Predicted to be involved in hyaluronan catabolic process. Predicted to be active in cytoplasmic vesicle. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-72l14.3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25973147..25980719, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25954012..25961661, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H Neighboring gene BLOC-1 related complex subunit 6 Neighboring gene microRNA 135b Neighboring gene xeroderma pigmentosum, complementation group C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hyalurononglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in hyaluronan catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Glyco_hydro_56 domain-containing protein; glyco_hydro_56 domain-containing protein
NP_001038450.1
XP_009302270.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044985.1 → NP_001038450.1  Glyco_hydro_56 domain-containing protein

    See identical proteins and their annotated locations for NP_001038450.1

    Status: PREDICTED

    Source sequence(s)
    BX784025
    UniProtKB/TrEMBL
    A0A8M1N9Q8, Q1LVE3
    Related
    ENSDARP00000122045.1, ENSDART00000135456.2
    Conserved Domains (1) summary
    pfam01630
    Location:35 → 354
    Glyco_hydro_56; Hyaluronidase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    25973147..25980719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009303995.4 → XP_009302270.1  glyco_hydro_56 domain-containing protein isoform X1

    See identical proteins and their annotated locations for XP_009302270.1

    UniProtKB/TrEMBL
    A0A8M1N9Q8, Q1LVE3
    Conserved Domains (1) summary
    pfam01630
    Location:35 → 354
    Glyco_hydro_56; Hyaluronidase
Nucleotide Protein
Heading Accession and Version

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