stoml1 stomatin (EPB72)-like 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: stoml1provided by ZNC
Official Full Name: stomatin (EPB72)-like 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-070209-241
See related: Ensembl:ENSDARG00000062142 AllianceGenome:ZFIN:ZDB-GENE-070209-241
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7145864; wu:fd21f07; zgc:158861
Summary: Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human STOML1 (stomatin like 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (22281458..22292463)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (22183910..22194915)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: stomatin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110032.1 → NP_001103502.1 stomatin-like protein 1

See identical proteins and their annotated locations for NP_001103502.1

Status: PROVISIONAL

Source sequence(s)

BC154121

UniProtKB/TrEMBL

A8KBI2

Related

ENSDARP00000083949.4, ENSDART00000089516.5

Conserved Domains (3) summary

smart00244
Location:94 → 232

PHB; prohibitin homologues

cd13436
Location:109 → 239

SPFH_SLP-1; Stomatin-like protein 1 (SLP-1), a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

pfam02036
Location:301 → 405

SCP2; SCP-2 sterol transfer family